PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g07540
Common NameGSCOC_T00022579001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TCP
Protein Properties Length: 385aa    MW: 43813.9 Da    PI: 8.0548
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g07540genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.59.6e-381222774133
          TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssa.......seceaess 78 
                   kdrhski T+ g+RdRR+Rls+++a++fFdLqd LGfdk+skt++WLl+q+  ai e+++                 ss+s+       +       
  Cc04_g07540 122 NKDRHSKINTAHGPRDRRMRLSLPVARKFFDLQDVLGFDKASKTVDWLLRQSSSAIEEIMRGlprmrhsrsvgantsvSSTSEgevvsgiE------- 212
                  79***********************************************************999887777666544331111121221111....... PP

          TCP  79 sssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                        +s++                 k++++++k+ k  +++a  + la+esr+ ar+rar+rt ek ++ 
  Cc04_g07540 213 ------DSIRdtthdnqqanisvkmkaKSSSKKEKKAKLVRRTA-LHRLARESRKVARERARKRTIEKRKLG 277
                  ......11113333333455667776444444445555555555.899*******************98865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-41121274IPR005333Transcription factor, TCP
PROSITE profilePS5136933.854122180IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.803256273IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MYPSSTNCTH NPIPFSWESV EHRPLFHSDI NPNSKFEDPL LTSLFHFASP CIYEDAVNEF  60
PWQQLDDTYL YQQQLSTAEN SLAEIVNHMA DPNSDPVHGL KQDWNKNGES TGEKVTRKRL  120
SNKDRHSKIN TAHGPRDRRM RLSLPVARKF FDLQDVLGFD KASKTVDWLL RQSSSAIEEI  180
MRGLPRMRHS RSVGANTSVS STSEGEVVSG IEDSIRDTTH DNQQANISVK MKAKSSSKKE  240
KKAKLVRRTA LHRLARESRK VARERARKRT IEKRKLGESR LCFAARDRES WGSFETDEGS  300
GTPAQKIHPS IEGLTEVEEL NPHERRLLET REYAAGEILL TTGNWNPSTI PVYQQNTEIS  360
NEHQFSDFQF CGKVWEAYDM SLGG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A068TT000.0A0A068TT00_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-24TCP domain protein 12